CryoEM Maps and Associated Data Submitted to the 2015/2016 EMDataBank Map Challenge

  1. Lawson, Catherine L. 1
  2. Chiu, Wah 2
  3. Carragher, Bridget 3
  4. Carazo, Jose-Maria 4
  5. Jiang, Wen 5
  6. Patwardhan, Ardan 6
  7. Rubinstein, John 7
  8. Rosenthal, Peter 8
  9. Sun, Fei 9
  10. Vonck, Janet 10
  11. Bai, Xiaochen 11
  12. Bell, James 12
  13. Caputo, Nick 13
  14. Chakraborty, Arka 14
  15. Chen, Dong-Hua 2
  16. Chen, James 13
  17. Diaz-Avalos, Ruben 15
  18. Donati, Laurene 16
  19. Estrozi, Leandro 17
  20. Galaz Montoya, Jesus 12
  21. Gati, Cornelius 11
  22. Gomez-Blanco, Josue 4
  23. Grigorieff, Nikolaus 15
  24. Gros, Piet 18
  25. Heymann, Bernard 19
  26. Leith, ArDean 20
  27. Li, Fei 21
  28. Ludtke, Steven 12
  29. Nans, Andrea 8
  30. Nilchian, Masih 16
  31. Punjabi, Ali 7
  32. Sixma, Titia 22
  33. Tegunov, Dimitry 23
  34. Yang, Kailu 24
  35. Yu, Guimei 5
  36. Zhang, Junjie 24
  37. Sala, Raul 1
  38. Alle Autoren anzeigen +
  1. 1 Rutgers University, USA
  2. 2 Stanford University, USA
  3. 3 New York Structural Biology Center, USA
  4. 4 Centro Nacional de Biotecnología, Madrid, ES
  5. 5 Purdue University, USA
  6. 6 EMBL European Bioinformatics Institute, UK
  7. 7 University of Toronto, CA
  8. 8 Francis Crick Institute, UK
  9. 9 Chinese Academy of Sciences, CN
  10. 10 Max Planck Institute for Biophysics, DE
  11. 11 MRC Laboratory of Molecular Biology, UK
  12. 12 Baylor College of Medicine, USA
  13. 13 Oregon Health Sciences University, USA
  14. 14 Institut de Biologia Molecular de Barcelona, ES
  15. 15 HHMI Janelia Research Campus, USA
  16. 16 École Polytechnique Fédérale de Lausanne, CH
  17. 17 Institut de Biologie Structurale Grenoble, FR
  18. 18 Utrecht University, NL
  19. 19 National Institutes of Health, USA
  20. 20 Wadsworth Laboratories, USA
  21. 21 The Scripps Research Institute La Jolla, USA
  22. 22 Netherlands Cancer Institute, NL
  23. 23 Max Planck Institute for Biochemistry, Martinsreid, DE
  24. 24 Texas A&M University, USA
Zugehörigkeit anzeigen +

Verleger: Zenodo

Datum der Publikation: 2017

Art: Dataset

CC BY 4.0

DOI: 10.5281/ZENODO.1120378 lock_openOpen Access editor

Zusammenfassung

Files and metadata associated with the EMDataBank/Unified Data Resource for 3DEM 2015/2016 Map Challenge hosted at challenges.emdatabank.org are deposited. All members of the Scientific Community--at all levels of experience--were invited to participate as Challengers, and/or as Assessors. Seven benchmark raw image datasets were selected for the challenge. Six are selected from recently described single particle structure determinations with image data collected as multi-frame movies; one is based on simulated (in silico) images. All of the raw image datasets are archived at pdbe.org/empiar. 27 Challengers created 66 single particle reconstructions from the targets, and then uploaded their results with associated details. 15 of the reconstructions were calculated using the SDSC Gordon supercomputer. This map challenge was one of two community-wide challenges sponsored by EMDataBank in 2015/2016 to critically evaluate 3DEM methods that are coming into use, with the ultimate goal of developing validation criteria associated with every 3DEM map and map-derived model.

Bibliographische Referenzen

  • 10.1093/nar/gkv1126
  • 10.1016/j.str.2011.12.014
  • 10.6019/empiar-10010
  • 10.6019/empiar-10012
  • 10.6019/empiar-10013
  • 10.6019/empiar-10026
  • 10.6019/empiar-10029
  • 10.6019/empiar-10025
  • 10.6019/empiar-10028
  • 10.6019/empiar-10005
  • 10.6019/empiar-10011
  • 10.1016/j.jsb.2016.02.008