Evolution of allele frequencies in the cattle breed Asturiana de los Valles

Resumen

Genotype data for 153 animals from the Asturiana de los Valles bovine breed, with birth dates from 1980 to 2013. These genotypes were obtained from 3 different sources: - 88 sires were genotyped using the Illumina’s BovineSNP50 v.2 chip; the resulting data are provided at plink ped/map format (asturiana_50K.tar.xz). - 50 animals (25 sires and 25 dams) were genotyped using the Illumina’s Bovine High Density BeadChip 770K SNP; the resulting data are provided at plink ped/map format (asturiana_800K.tar.xz). - 15 sires were sequenced on a HiSeq 3,000; the resulting genotype calls are provided at vcf format (asturiana_WGS_SNP.vcf.gz). Boitard et al (2021) combined these 3 datasets in order to detect recent and historical selection signatures in this breed. The scripts used for this analysis can be found at https://github.com/sboitard/Asturiana_analysis.