Publications by the researcher in collaboration with JAVIER VARGAS BALBUENA (20)

2022

  1. Hierarchical autoclassification of cryo-EM samples and macromolecular energy landscape determination

    Computer Methods and Programs in Biomedicine, Vol. 216

2021

  1. DeepEMhancer: a deep learning solution for cryo-EM volume post-processing

    Communications Biology, Vol. 4, Núm. 1

  2. Local computational methods to improve the interpretability and analysis of cryo-EM maps

    Nature Communications, Vol. 12, Núm. 1

  3. Local methods to improve cryo-electron microcopy maps

    Optics InfoBase Conference Papers

2020

  1. Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy

    RNA, Vol. 26, Núm. 12, pp. 2017-2030

2019

  1. A robust approach to ab initio cryo-electron microscopy initial volume determination

    Journal of Structural Biology, Vol. 208, Núm. 3

  2. Deep learning for validating and estimating resolution of cryo-electron microscopy density maps

    Molecules, Vol. 24, Núm. 6

  3. Role of Era in assembly and homeostasis of the ribosomal small subunit

    Nucleic Acids Research, Vol. 47, Núm. 15, pp. 8301-8317

2018

  1. Blind estimation of DED camera gain in Electron Microscopy

    Journal of Structural Biology, Vol. 203, Núm. 2, pp. 90-93

  2. MonoRes: Automatic and Accurate Estimation of Local Resolution for Electron Microscopy Maps

    Structure, Vol. 26, Núm. 2, pp. 337-344.e4

2017

  1. A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy

    BioMed Research International, Vol. 2017

  2. A review of resolution measures and related aspects in 3D Electron Microscopy

    Progress in Biophysics and Molecular Biology, Vol. 124, pp. 1-30

  3. Quantitative analysis of 3D alignment quality: Its impact on soft-validation, particle pruning and homogeneity analysis

    Scientific Reports, Vol. 7, Núm. 1

2016

  1. Asymmetric cryo-EM reconstruction of phage MS2 reveals genome structure in situ

    Nature Communications, Vol. 7

  2. Denoising of high-resolution single-particle electron-microscopy density maps by their approximation using three-dimensional Gaussian functions

    Journal of Structural Biology, Vol. 194, Núm. 3, pp. 423-433

  3. Fast and automatic identification of particle tilt pairs based on Delaunay triangulation

    Journal of Structural Biology, Vol. 196, Núm. 3, pp. 525-533

  4. Foil-hole and data image quality assessment in 3DEM: Towards high-throughput image acquisition in the electron microscope

    Journal of Structural Biology, Vol. 196, Núm. 3, pp. 515-524

  5. Local analysis of strains and rotations for macromolecular electron microscopy maps

    Journal of Structural Biology, Vol. 195, Núm. 1, pp. 123-128

  6. Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy

    Journal of Structural Biology, Vol. 195, Núm. 1, pp. 93-99

2013

  1. Semiautomatic, high-throughput, high-resolution protocol for three-dimensional reconstruction of single particles in electron microscopy

    Methods in Molecular Biology, Vol. 950, pp. 171-193