Publications in collaboration with researchers from Wageningen UR (16)

2024

  1. Escherichia coli from six European countries reveals differences in profile and distribution of critical antimicrobial resistance determinants within One Health compartments, 2013 to 2020

    Eurosurveillance, Vol. 29, Núm. 47

  2. Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes

    Frontiers in Microbiology, Vol. 15

2022

  1. Antimicrobial resistance genes aph(3′)-III, erm(B), sul2 and tet(W) abundance in animal faeces, meat, production environments and human faeces in Europe

    Journal of Antimicrobial Chemotherapy, Vol. 77, Núm. 7, pp. 1883-1893

  2. Determinants for antimicrobial resistance genes in farm dust on 333 poultry and pig farms in nine European countries

    Environmental Research, Vol. 208

  3. Harmonisation of in-silico next-generation sequencing based methods for diagnostics and surveillance

    Scientific reports, Vol. 12, Núm. 1, pp. 14372

2021

  1. Assigning defined daily/course doses for antimicrobials in turkeys to enable a cross-country quantification and comparison of antimicrobial use

    Antibiotics, Vol. 10, Núm. 8

  2. Genomic evolution of antimicrobial resistance in Escherichia coli

    Scientific Reports, Vol. 11, Núm. 1

  3. Risk factors for antimicrobial resistance in turkey farms: A cross-sectional study in three european countries

    Antibiotics, Vol. 10, Núm. 7

2020

  1. Farm dust resistomes and bacterial microbiomes in European poultry and pig farms

    Environment International, Vol. 143

2019

  1. Associations between antimicrobial use and the faecal resistome on broiler farms from nine European countries

    Journal of Antimicrobial Chemotherapy, Vol. 74, Núm. 9, pp. 2596-2604

  2. Quantitative and qualitative analysis of antimicrobial usage at farm and flock level on 181 broiler farms in nine European countries

    Journal of Antimicrobial Chemotherapy, Vol. 74, Núm. 3, pp. 798-806

  3. Quantitative and qualitative analysis of antimicrobial usage patterns in 180 selected farrow-to-finish pig farms from nine European countries based on single batch and purchase data

    Journal of Antimicrobial Chemotherapy, Vol. 74, Núm. 3, pp. 807-816

  4. Successful Host Adaptation of IncK2 Plasmids

    Frontiers in Microbiology, Vol. 10

2018

  1. Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries

    Nature Microbiology, Vol. 3, Núm. 8, pp. 898-908

  2. Erratum to: Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries (Nature Microbiology, (2018), 3, 8, (898-908), 10.1038/s41564-018-0192-9)

    Nature Microbiology

  3. Plasmids carrying antimicrobial resistance genes in Enterobacteriaceae

    Journal of Antimicrobial Chemotherapy, Vol. 73, Núm. 5, pp. 1121-1137